You are here

Bibliography

Bibliography

Briggs, A.W., Good, J.M., Green, R.E., Krause, J. Maricic, T., Stenzel, U., Lalueza-Fox, C., Rudan, P., Brajkovi, D., Kuan, ., Gui, I., Schmitz, R., Doronichev, V.B., Golovanova, L. V., de la Rasilla, M., Fortea, J., Rosas, A., Pääbo, S., 2009. Targeted retrieval and analysis of five Neandertal mtDNA genomes. Science 325: 318-321.

Brown, T.A., 2010. Stranger from Siberia. Nature 464: 838-839.

Callaway, Ewen. 2009. First draft of Neanderthal genome is unveiled. New Scientist. 12 Feb 2009.

Caramelli, D., Milani, L., Vai, S., Modi, A., Peccholi, E., Girardi, M., Pilli, E., Lari, M., Lippi, B., Ronchitelli, A., Mallegni, F., Casoli, A., Bertorelle, G., Barbujani, G., 2008. A 28,000 years old Cro-Magnon mtDNA sequence differs from all potentially contaminating modern sequences. PLoS One 3(7): e2700.

Coop, G., Bullaughey, K. Luca, F., Przeworski, M., 2008. The timing of selection at the human FOXP2 Gene. Molecular Biology and Evolution 25(7): 1257-1259.

Currat, M., Excoffier, L., 2004. Modern humans did not admix with Neanderthals during their range expansion into Europe. PLoS Biology 2: e421.

Dalton, R., 2006. Neanderthal DNA yields to genome foray. Nature 441: 260-261.

Dalton, R., 2006. Neanderthal genome sees first light. Nature 444: 254.

Dannerman, M., Andres, A.M., Kelso, J. Introgression of Neandertal- and Denisovan-like Haplotypes Contributes to Adaptive Variation in Human Toll-like Receptors. 2016. The American Journal of Human Genetics: 98(1) 22-33.

Evans, P.D., Mekel-Bobrov, N., Vallender, E.J., Hudson, R.R., Lahn, B.T., 2006. Evidence that the adaptive allele of the brain size gene microcephalin introgressed into Homo sapiens from an archaic Homo lineage. Proceedings of the National Academy of Sciences 103(48): 18178-18183.

Fu, Q., Hajdinjak, M., Moldovan, O.T., Constantin, S., Mallick, S., Skoglund, P., Patterson, N., Rohland, N., Lazaridis, I., Nickel, B., Viola, B., Profer, K., Meyer, M., Kelso, J., Reich, D., Pääbo, S., 2015. An early modern human from Romania with a recent Neanderthal ancestor. Nature. 524(7564):216-9.

Green, R. E., J. Krause, Briggs, A.W., Marcic, T., Stensel, U., Kircher, M.,  Patterson, N.Fritz, M., Hansen, N., Durand, E.Y., Malaspinas, A-S, Jensen, J.D., Marques-Bonet, T., Alkan, C., Prüfer, K., Meyer, M., Burbano, H.A., Good, J.M., Schultz, R., Aximu-Petri, A., Butthof, A., Höber, B., Höffner, B., Siegemund, M., Weihmann, A., Nusbaum, C., Lander, E.S., Russ, C., Novod, N., Affourtit, J., Egholm, M., Verna, C., Rudan, P., Brajkovic, D., Kucan, Ž., Gušic, I., Doronichev, V.B., Golovanova, L.V., Lalueza-Fox, C., de la Rasilla, M., Fortea, J., Rosas, A., Schmitz, R.W., Eichler, E.E., Falush, D., Birney, E., Mullikan, J.C. Slatkin, M., Neilsen, R., Kelso, J., Lachmann, M., Reich, D., Pääbo, S., 2010. A draft sequence of the Neandertal genome.Science 328: 710-722.

Green, R. E., Krause, J., Ptak, S.E., Briggs, A.W., Ronan, M.T., Simons, J.F., Du, L., Egholm, M., Rothberg J.M., Paunovic, M., Pääbo, S.,. 2006. Analysis of one million base pairs of Neanderthal DNA. Nature 444: 330-336.

Green, R. E., Malaspinas, A.-S. Krause, J., Briggs, A., Johnson, P., Uhler, C., Meyer, M., Good, J., Maricic, T., Stenzel, U., 2008. A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell 134: 416-426.

Hofreiter, M., Serre, D., Poinar, H.N., Kuch, M., Pääbo, S., 2001. Ancient DNA. Nature Reviews2: 353-359.

Holden, C., 2006. It's Neanderthal Time. Science 313: 279.

Krause, J., Lalueza-Fox, C., Orlando, L., Enard, W., Green, R.E., Burbano, H.A., Hublin, J.-J., Hänni, C., Fortea, J., de la Rasilla, M., Bertranpetit, J., Rosas, A., Pääbo, S., 2007. The derived FOXP2 variant of modern humans was shared with Neandertals. Current Biology 17: 1908-1912.

Krings, M., Stone, A., Schmitz, R.W., Krainitzki, H., Stoneking, M., Pääbo, S., 1997. Neandertal DNA Sequences and the origin of modern humans. Cell 90: 19-30.

Krings, M., Geisert, H., Schmitz, R.W., Krainitzki, H., Pääbo, S., 1999. DNA Sequence of the mitochondrial hypervariable region II from the Neanderthal type specimen. Proceedings of the National Academy of Sciences USA 96: 5581-5585.

Kuhlwilm M, Gronau I, Hubisz MJ, de Filippo C, Prado-Martinez J, Kircher M, Fu Q, Burbano HA, Lalueza-Fox C, de La Rasilla M, Rosas A. 2016. Ancient gene flow from early modern humans into Eastern Neanderthals. Nature. 530(7591):429-33.

Lalueza-Fox, C., Gigli, E., de la Rasilla, M., Fortea, J., Rosas, A., Bertranpetit, J.,  Krause, J., 2008. Genetic characterization of the ABO blood group in Neandertals. BMC Evolutionary Biology 8: 342.

Lalueza-Fox, C., E. Gigli, E., de la Rasilla, M., Fortea, J., Rosas, A., 2009. Bitter taste perception in Neanderthals through the analysis of the TAS2R38 gene. Biology Letters 5: 809-811.

Lalueza-Fox, C., Römpler, H., Caramelli, D., Stäubert, C., Catalano, G., Hughes, D., Rohland, N., Pilli, E., Longo, L., Condemi, S., de la Rasilla, M., Fortea, J., Rosas, A., Stoneking, M., Schöneberg, T., Bertranpetit, J., Hofreiter, M., 2007. A melanocortin 1 receptor allele suggests varying pigmentation among Neanderthals. Science 318: 1453-1455.

Lopez-Valenzuela M., Ramírez O., Rosas A., García-Vargas S., de la Rasilla M., Lalueza-Fox C., Espinosa-Parrilla Y., 2012.  An ancestral miR-1304 allele present in Neanderthals regulates genes involved in enamel formation and could explain dental differences with modern humans. Molecular biology and evolution. mss023.

Mackelprang, R., Rubin, E.M., 2008. New tricks with old bones. Science 321: 221-212.

Meyer M., Arsuaga J.L., De Filippo C., Nagel S., Aximu-Petri A., Nickel B., Martínez I., Gracia A., de Castro J.M.B., Carbonell E., Viola B., Kelso J., Prüfer K., Pääbo S. 2016. Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins. Nature 531, 504–507.

Millar CD.,  Lambert DM., 2013. Ancient DNA: Towards a million-year-old genome. Nature 499, 34–35.

Noonan, J.P., Coop, G., Kudaravalli, S.,  Smith, D., Krause, J., Alessi, J. Chen, F., Platt, D., Pääbo, S., Pritchard, J.K., Rubin, E.M., 2006. Sequencing and analysis of Neanderthal genomic DNA. Science 314: 1113-1118.

Pennisi, E., 2009. Sequencing Neandertal mitochondrial genomes by the half-dozen. Science325: 252.

Plagnol, V., Wall, J.D., 2006. Possible ancestral structure in human populations. PLoS Genetics 2(7): 0972-0979.

Prüfer K., Racimo F., Patterson N., Jay F., Sankararaman S., Sawyer S., Heinze A., Renaud G., Sudmant PH., Filippo C., Li H., Mallick S., Dannemann M., Fu Q., Kircher M., Kuhlwilm M., Lachmann M., Meyer M., Ongyerth M., Siebauer M., Theunert C., Tandon A., Moorjani P., Pickrell J., Mullikin J.C., Vohr S. H., Green R.E.. Hellmann I., Johnson L.F.P.,Blanche H., Cann H., Kitzman J.O., Shendure J., Eichler E.E., Lein E.S., Bakken T.E., Golovanova L.V.,Doronichev V.B., Shunkov M.V.,Derevianko A.P., Viola B., Slatkin M., Reich D., Kelso J., Pääbo S., 2014. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature 505, 43–49.

Reich, D., 2010. Genetic history of an archaic hominin group from Denisova Cave in Siberia.. Nature 468 p. 1053.

Relethford, J. H., 2008. Genetic evidence and the modern human origins debate. Heredity100: 555-563.

Satta, Y., Takahata. N., 2002. Out of Africa with regional interbreeding? Modern human origins. BioEssays 24: 871-875.

Schmitz, R., Serre, D., Bobani, G., Feine, S., Hillgruber, F., Krainitzki, H., Pääbo, S., Smith, F.H., 2002. The Neandertal type site revisited: Interdisciplinary investigations of skeletal remains from the Neander Valley, Germany. Proceedings of the National Academy of Sciences99(20): 13342-13347.

Serre, D., Langaney, A., Chech, M., Teschler-Nicola, M., Paunovic, M., Mennecier, P., Hofreiter, M., Possnert, G., Pääbo, S., 2004. No evidence of Neanderthal mtDNA contribution to early modern humans. PLoS Biology 2: 0313-0317.

Simonti, C.N., Vernot, B., Bastarache, L., Bottinger, E., Carrell, D.S., Chisholm, R.L., Crosslin, D.R., Hebbring, S.J., Jarvik, G.P., Kullo, I.J. Li, R., Pathak, J., Ritchie, M.D., Roden, D.M., Verma, S.S., Tromp, G., Prato, J.D., Bush, W.S., Akey, J.M., Denny, J.C., Capra, J.A.  2016. The phenotypic legacy of admixture between modern humans and Neandertals. Science, 351(6274), pp.737-741.

Templeton, A., 2002. Out of Africa again and again. Nature 416: 45-51.

Templeton, A., 2005. Haplotype trees and modern human origins. Yearbook of Physical Anthropology 48: 33-59.

Templeton, A., 2007. Genetics and recent human evolution. Evolution 61(7): 1507-1519.

Wall, J.D., Kim, S.K., 2007. Inconsistencies in Neanderthal genomic DNA sequences. PLoS Genetics 3(10): e175.

Wang, C.C., Farina SE., Li H. 2013. Neanderthal DNA and modern human origins. Quaternary International 295: 126-129.

 

Further reading:

https://www.scientificamerican.com/article/neandertal-dna-affects-modern-ethnic-difference-in-immune-response/?WT.mc_id=SA_EVO_20161024

http://www.vox.com/2016/9/14/12887956/human-neanderthal-sex-love-genetics